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{3} Active Tickets by Milestone (112 matches)

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Release (2 matches)

Ticket Summary Component Version Type Owner Status Created
#1133 Cannot use on cygwin Build System defect weese new 02/11/14
#1134 Cannot use on cygwin Build System defect weese new 02/11/14

Backlog Release (6 matches)

Ticket Summary Component Version Type Owner Status Created
#852 Dequeue of pointers doesn’t work Core Library trunk_pre1.4 defect weese new 01/27/11
#857 Memoryleak in nested maps Alignments trunk_pre1.4 defect bkehr new 02/08/11
#861 Change parameter order in graph functions Graph Library trunk_pre1.4 defect holtgrew new 02/25/11
#862 Lots of graph iterators broken for const graphs Core Library trunk_pre1.4 defect holtgrew new 02/25/11
#925 More robust/verbose handling in case of out-of-memory situations. Core Library trunk_pre1.4 defect weese new 12/19/11
#991 seqan::_compareTextFiles should report the differing lines or at least the differing files Test System trunk_pre1.4 enhancement holtgrew new 02/26/13

Release 1.5 Release (92 matches)

Ticket Summary Component Version Type Owner Status Created
#280 Problems Iterators and Const Iterators Core Library 1.1 defect weese new 06/09/10
#380 Move (construction) does not work for arrays. Core Library 1.2 defect doering new 10/18/10
#841 Rooted iterator assignment Core Library defect holtgrew new 01/03/11
#1023 Migrate existing DDDoc documentation to new dox system Documentation 1.4.0 defect holtgrew new 05/06/13
#1092 Decide about allocators in SeqAn Core Library 1.4.2 enhancement weese new 08/02/13
#850 Document usage of resize Documentation trunk_pre1.4 defect holtgrew assigned 01/21/11
#1047 Missing documentation placeholders (substring -> infix) Documentation 1.4.0 defect holtgrew new 06/24/13
#1054 File I/O does not support error checking Core Library 1.4.0 defect weese new 06/24/13
#1105 readRecord() doesn't check for unexpected characters in the right way Sequence I/O 1.4.2 defect h4nn3s new 09/18/13
#95 MotifFinder unlikely to produce correct results Unspecified 1.1 defect holtgrew new 08/13/09
#837 Review problem with pointer/array adaptions. Core Library 1.3 defect weese new 01/02/11
#851 Re-enable test_parallel on LLVM when clang++ bug is fixed. Core Library trunk_pre1.4 defect holtgrew new 01/25/11
#865 behaviour of clear(finder) not consistent Search Algorithms trunk_pre1.4 defect weese new 03/11/11
#873 libexecinfo not properly included (not found on FreeBSD) Core Library defect h4nn3s new 04/04/11
#894 Dequeue lacks Metafunction Value Core Library defect weese new 07/15/11
#939 Missing functions in concepts Core Library trunk_pre1.4 defect weese new 03/15/12
#967 value function for Gaps objects not implemented Alignments trunk_pre1.4 defect holtgrew new 09/05/12
#990 Test using SEQAN_PATH_TO_ROOT fail with CMake Ninja generator Test System trunk_pre1.4 defect holtgrew new 02/07/13
#992 Usage of hidden options is not consistent in seqan apps Applications trunk_pre1.4 defect new 02/26/13
#1002 stream I/O for containers with non-contiguous/non-trivial buffers Core Library trunk_pre1.4 defect weese new 03/20/13
#1003 atEnd() behaves non-intuitively in a Segment iterator Core Library trunk_pre1.4 defect weese new 04/03/13
#1014 const-incorrectness with default pointer iterators Core Library trunk_pre1.4 defect weese new 04/26/13
#1020 Improve index documentation Documentation 1.4.0 defect jsinger new 05/06/13
#1032 Rename seqId in GenomicRegion to rID Core Library 1.4.0 defect weese new 05/17/13
#1041 SeqIOFileType_ and SeqIOFileFormat_ dont comply to TagSelector/TagList interface Core Library 1.4.0 defect holtgrew new 06/11/13
#1055 Documentation section "Example Programs" and inline examples should be grouped together Documentation 1.4.0 defect holtgrew new 06/24/13
#1063 Inconsistent usage of seqan namespace Documentation 1.4.0 defect weese new 06/24/13
#1065 Throw out UnorderedTree specialization of JournalEntries Core Library 1.4.0 defect rmaerker new 06/24/13
#1066 Allow toViewPosition() and toSourcePosition() variants that project to the left Alignments 1.4.0 defect weese new 06/24/13
#1071 Inconsistent order of template parameters Documentation 1.4.0 defect holtgrew new 06/26/13
#1078 Is<> not working with Concepts in MSVC Core Library trunk_pre1.4.1 defect weese new 07/03/13
#1080 StringSet<CharString const, Owner<ConcatDirect<>>> doesn't work Core Library 1.4.0 defect weese new 07/08/13
#1084 Remove SEQAN_CHECKPOINT Core Library 1.4.2 defect weese new 07/20/13
#1086 Some comparison operators missing for ModifiedIterators Core Library 1.4.2 defect weese new 07/29/13
#1087 SAM/BAM I/O tutorial should explain how to get sequence name Documentation 1.4.2 defect holtgrew new 07/29/13
#1091 Affine scoring not according to literature Core Library 1.4.2 defect weese new 08/01/13
#1095 index SAQSort Core Library 1.4.2 defect weese new 08/19/13
#1096 DefaultFinder for IndexSa is not defined (or void) Core Library 1.4.2 defect weese new 08/19/13
#1101 dependency of sequence module on file-module Core Library 1.4.2 defect weese new 08/30/13
#1103 Header records are missing, when reading BAM files from ENCODE Core Library 1.4.2 defect weese new 09/17/13
#1104 Remove EOF_BEFORE_SUCCESS from read/skipLine Sequence I/O 1.4.2 defect h4nn3s new 09/18/13
#1107 Bug + fix in Skew7 algorithm for indices on std adaptions Indices 1.4.2 defect weese new 09/24/13
#1110 Index over an existing char array ... or: Holder of a pointer Core Library 1.4.2 defect weese new 09/26/13
#1113 Index with const alphabet gives compile errors Core Library 1.4.2 defect weese new 09/26/13
#1114 BamStream - Read from stdin and write to stdout does not work for BAM format Sequence I/O 1.4.2 defect holtgrew new 09/26/13
#1115 FileStream seek problem on Windows Core Library 1.4.2 defect weese new 10/09/13
#1116 One end anchored reads not written out correctly in FragmentStore SAM Output Fragment Store 1.4.2 defect weese new 10/14/13
#1122 goDown causes assertion on small index Indices 1.4.2 defect weese new 11/12/13
#1124 MMap String cannot open read-only files. Core Library 1.4.2 defect weese new 11/16/13
#1126 OpenMP support not enabled if C compiler doesn't support OpenMP Build System 1.4.2 defect holtgrew new 11/27/13
#1130 OperationalError: (1093, "You can't specify target table 'session_attribute' for update in FROM clause") Websites 1.4.2 defect holtgrew new 01/16/14
#274 Make access to nested types consistent Core Library 1.1 enhancement weese assigned 04/26/10
#343 Mark deprecated functionality as such Documentation enhancement holtgrew new 10/08/10
#367 Cleanup of string_journaled Alignments 1.2 enhancement rmaerker new 10/11/10
#486 Unify naming scheme of patterns Search Algorithms enhancement holtgrew new 11/16/10
#847 Conditionally enable global functions like begin and end Core Library trunk_pre1.4 enhancement holtgrew new 01/12/11
#855 _min and _max interface improvement Core Library trunk_pre1.4 enhancement weese new 02/05/11
#913 Write tutorial on parse_lm module Documentation trunk_pre1.4 enhancement holtgrew new 10/24/11
#924 Connected components algorithm should work for arbitrary graphs. Graph Library trunk_pre1.4 enhancement bkehr new 12/08/11
#936 Simplify begin(), end(). Core Library trunk_pre1.4 enhancement weese new 03/09/12
#974 Implement maximum weight bipartite matching Graph Library trunk_pre1.4 enhancement holtgrew new 10/01/12
#1000 Add soft/hard clipping support to FragmentStore Fragment Store trunk_pre1.4 enhancement weese new 03/18/13
#1001 Unify usage of tags in functions Core Library trunk_pre1.4 enhancement weese new 03/20/13
#1036 ArgumentParser Improvements Argument Parser 1.4.0 enhancement aiche new 05/27/13
#1045 Refurbish documentation for hash2, hash2Next, hashUpper, hash2Upper Core Library 1.4.0 enhancement weese new 06/19/13
#1067 Add functions for counting gaps to the left of a given position/iterator. Alignments 1.4.0 enhancement weese new 06/24/13
#1073 File extension requirement in ArgumentParser makes integration into Galaxy non-trivial Argument Parser 1.4.0 enhancement holtgrew assigned 06/28/13
#1074 Track current line/column in RecordReader Sequence I/O 1.4.0 enhancement holtgrew new 06/28/13
#1082 Add align_profile module Core Library 1.4.2 enhancement weese new 07/15/13
#1097 Feature request: Suffix<Index> Core Library 1.4.2 enhancement weese new 08/20/13
#1099 Mistake in the tutorial Documentation 1.4.2 enhancement holtgrew new 08/24/13
#1106 Clean up MaximumValue and MinimumValue metafunctions Core Library 1.4.2 enhancement weese new 09/20/13
#1120 Use -isystem for system headers Build System 1.4.2 enhancement weese new 10/31/13
#1123 Optimize FM index? Documentation 1.4.2 enhancement jsinger new 11/15/13
#1129 Download in plain text link is broken. Documentation 1.4.2 enhancement holtgrew new 01/07/14
#1132 Add Affix Index Structure Indices 1.4.2 enhancement weese new 01/21/14
#360 Remove values-are-containers feature Core Library 1.2 task holtgrew new 10/11/10
#361 Re-work I/O code Core Library 1.2 task holtgrew new 10/11/10
#363 Get rid of Holder Core Library 1.2 task holtgrew new 10/11/10
#838 Clarify position of ordValue Core Library 1.3 task weese new 01/02/11
#849 Remove types Ascii, Byte and Unicode Core Library trunk_pre1.4 task holtgrew new 01/18/11
#881 Inconsistent behaviour of Value Metafunction Core Library trunk_pre1.4 task weese new 04/23/11
#882 Discuss setValue semantics for Iterators Core Library trunk_pre1.4 task weese new 04/24/11
#909 Provide man Files Documentation trunk_pre1.4 task weese new 09/21/11
#1024 Document "pointer" behaviour of segments and modified strings Documentation 1.4.0 task weese new 05/06/13
#1088 Nice Advanced Tutorial: Overlapping Read Joiner Documentation 1.4.2 task holtgrew new 07/29/13
#1094 Restructure demo directory Core Library 1.4.2 task holtgrew new 08/15/13
#250 Cannot iterator over const ModifiedString Core Library 1.1 defect holtgrew assigned 01/15/10
#277 merge order Core Library defect rmaerker new 06/01/10
#866 apps/snp_store (trunk) FTBFS on FreeBSD Applications trunk_pre1.4 defect emde new 03/16/11
#869 Bit-Compressed Tuples don't work in some cases Core Library trunk_pre1.4 defect weese new 03/26/11
#877 setHaystack Search Algorithms trunk_pre1.4 defect holtgrew new 04/15/11
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